Bioinformatics Support Program

Bioinformatics Support Program was developed to provide researchers with powerful tools to analyze and understand the biological significance of a variety of data.

Peer Reviewed Journals

• Bioinformatics
• BMC Bioinformatics
• BMC Genomics
• BMC Proteomics
• Briefings in Bioinformatics
• Bulletin of Mathematical Biology
• Bulletin of Mathematical Biology
• Cancer Informatics
• Computational Biology and Chemistry
• Computational Molecular Biology
• Computers in Biology and Medicine
• Database (journal)
• EMBnet.journal
• IEEE/ACM Transactions on Computational Biology and Bioinformatics
• Journal of Bioinformatics and Computational Biology
• Journal of Biomedical Informatics
• Journal of Computational Biology
• Journal of Integrative Bioinformatics
• Journal of Mathematical Biology
• Journal of Theoretical Biology
• Nucleic Acids Research
• PLoS Computational Biology
• Rapid Communications in Mass Spectrometry
• Source Code for Biology and Medicine
• Statistical Applications in Genetics and Molecular Biology

Bioinformatics and Molecular Biology Databases

• Nucleic Acid Research Database Summary
• PubMed Literature Database
• NCBI Databases
• PubMed Central (PMC) Free Full Text Journal Database

Bioinformatics and Molecular Biology Web Servers

• Bioinformatics Web Servers
• Bioinformatics Link Directory

Patents

• USPTO
• Intellectual Property India (IPAIRS)

Open Source Softwares

• .NET Bio
  A language-neutral bioinformatics toolkit built using the Microsoft 4.0 .NET Framework to help developers, researchers, and scientists. Platform : .NET Framework. License : Apache License.
  
  
• AMPHORA
  Metagenomics analysis software Platform : Linux. License : GNU General Public License.
  
  
• Anduril
  Component-based workflow framework for data analysis Platform : Linux, Mac OS X, Windows. License : GPL.
  
  
• AutoDock
  Suite of automated docking tools Platform : Platform. License : GNU GPL. "
  
  
• Biochemical Algorithms Library (BALL)
  C++ library and framework for molecular modeling and visualization designed for rapid prototyping Platform : Linux, Mac OS X, Windows. License : LGPL."
  
  
• Bioclipse
  Visual platform for chemo- and bioinformatics based on the Eclipse Rich Client Platform (RCP). Platform : Platform. License : Eclipse Public License.
  
  
• Bioconductor
  R (programming language) language toolkit Platform : Linux, Mac OS X, Windows. License : Artistic License 2.0.
  
  
• BioJava
  Java (programming language) Platform : Linux, Mac OS X, Windows. License : LGPL v2.1.
  
  
• BioMOBY
  Registry of web services Platform : Web. License : Artistic License.
  
  
• BioPerl
  Perl language toolkit Platform : Cross-platform. License : Artistic License & GPL.
  
  
• BioPHP
  PHP language toolkit Platform : Platform. License : GPL v2.
  
  
• Biopython
  Python language toolkit Platform : Cross-platform. License : Biopython License.
  
  
• BioRuby
  Ruby language toolkit Platform : Platform. License : GNU GPL v2 or Ruby license.
  
  
• EMBOSS
  Suite of packages for sequencing, searching, etc. Platform : Platform. License : General Public Licence (GPL) and Library GPL.
  
  
• Galaxy
  Scientific workflow and data integration system Platform : Unix-like. License : Academic Free License.
  
  
• GenePattern
  Scientific workflow system that provides access to more than 150 genomic analysis tools Platform : Unix-like (public server); Linux, Mac OS X, Windows. License : MIT license.
  
  
• GeWorkbench
  Genomic data integration platform Platform : Linux, Mac OS X, Windows. License : License.
  
  
• GMOD
  Toolkit for addressing many common challenges at biological databases. Platform : Unix-like (server), Web browser (client). License : Varies depending on tool.
  
  
• GenGIS
  Application that allows users to combine digital map data with information about biological sequences collected from the environment. Platform : Windows, Mac OS X. License : GPL.
  
  
• GenomeSpace
  Centralized web application that provides data format transformations and facilitates connections with other bioinformatics tools Platform : Web browser. License : LGPL.
  
  
• GENtle
  An equivalent to the proprietary Vector NTI, a tool to analyze and edit DNA sequence files Platform : Platform. License : GPL.
  
  
• Integrated Genome Browser
  Java-based desktop genome browser Platform : Linux, Mac OS X, Windows. License : CPL 1.0.
  
  
• InterMine
  Extensive data warehouse system for the analysis and integration of biological datasets Platform : Cross-platform. License : LGPL.
  
  
• LabKey Server
  Platform for integrating, analyzing and sharing data Platform : Linux, Mac OS X, Windows. License : Apache License.
  
  
• PathVisio
  A desktop software for drawing, analysis and visualization of biological pathways Platform : Linux, Mac OS X, Windows. License : Apache 2.0 License.
  
  
• Staden Package
  Sequence assembly, editing and analysis, primarily consisting of gap4, gap5 and spin. Platform : Linux, Mac OS X, Windows. License : BSD.
  
  
• STAMP
  Software package for analyzing metagenomic profiles that promotes ‘best practices’ in choosing appropriate statistical techniques and reporting results. Platform : Windows, Mac OS X. License : GPL.
  
  
• Taverna workbench
  Tool for designing and executing workflows Platform : Linux, Mac OS X, Windows. License : LGPL.
  
  
• UGENE
  Integrated bioinformatics tools Platform : Linux, Mac OS X, Windows. License : GPL2.