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JAYPEE UNIVERSITY OF INFORMATION TECHNOLOGY

Established under H.P. Legislative Assembly Act No. 14 of 2002
and Approved by UGC under section 2(f)

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Biotechnology and Bioinformatics


Faculty

Dr. Raghu M. Yennamalli
Assistant Professor (Grade II)

Office: Department of Biotechnology and Bioinformatics, Contact No: (91)-1792-239-305
Email: ym.ragothaman@juit.ac.in

For More Information Click here

Biography

Dr. Yennamalli completed his PhD in Computational Biology and Bioinformatics in 2008 from Jawaharlal Nehru University, New Delhi. He conducted postdoctoral research at Iowa State University (2009-2011), University of Wisconsin-Madison (2011-2012), and Rice University (2012-2014).  Currently he is an Assistant Professor (Grade II) at Jaypee University of Information Technology, Waknaghat.

Research Gate Score:  27.84

H Index (Scopus): 10

H-index (Google Scholar):  10

i10-index (Google Scholar):  12 

Reviewer for Structure (Cell press), PLOS Computational Biology, PLOS One, Journal of Emerging Investigators, Bioinformation, International Journal for Computational Biology, Journal of Clinical Medicine, International Journal of Biological Macromolecules, and Biochemistry and Biophysics Reports

 


Author Publication Profile:
Publication(s):
2018 (4)2017 (7)2016 (7)All

Book Chapter(s) :
  1. Raghu M. Yennamalli (2018). Protein Design. In Shoba Ranganathan, Reference Module in Life Sciences (Ist, pp. 1-8). Netherlands: Elsevier. [ISBN : 9780128096338] . Google Search

Journal(s) :
  1. Mansi Arora, Raghu M. Yennamalli , Taner Z. Sen (2018). Application of Molecular Simulations Toward Understanding Cellulase Mechanisms. BioEnergy Research, 11 (4), 850-867. Google Citation
  2. PP Panigrahi, R Singla, A Bansal, MC Junior, V Jaitak, Raghu M. Yennamalli , Tiratha Raj Singh (2018). In silico Screening and Molecular Interaction Studies of Tetrahydrocannabinol and its Derivatives with Acetylcholine Binding Protein. Current Chemical Biology, 12 (2), 181-190
  3. Ankita Shukla, Raghu M. Yennamalli , Tiratha Raj Singh (2018). Network and structure based inference of functional single nucleotide polymorphisms associated with the TGFβ1 gene and its role in colorectal cancer (CRC) . Gene Reports, 11 (June 2018), 131-142
  4. Gayathri S. Singaraju, Anuj Kumar, Jesse S. Samuel, Amin Sagar, Jagadish P. Hazra, Malay K. Sannigrahi, Raghu M. Yennamalli , F. N. U. Ashish, Sabyasachi Rakshit (2017). Molecular mechanism of cell-cell adhesion mediated by cadherin-23. bioRxiv , (), 1-28
  5. Nancy Singh, Sunil Datt Sharma , Raghu M. Yennamalli (2017). Modified S-transform as a tool to identify secondary structure elements in RNA. Bio-Algorithms and Med-Systems, 13 (4), 187-193
  6. Deepika Chauhan, Pulkit Anupam Srivastava, Raghu M. Yennamalli , Richa Priyadarshini (2017). Draft Genome Sequence of Deinococcus indicus DR1, a Novel Strain Isolated from a Freshwater Wetland. Genome Announcements, 5 (31), e00754-17-
  7. Pulkit Anupam Srivastava, Siddhant Kalra, Raghu M. Yennamalli (2017). Structural Bioinformatics and Big Data Analytics: a mini-review. International Journal for Computational Biology, 6 (1), 25-30
  8. Avni Vij, Raghu M. Yennamalli , Harish Changotra (2017). Non-Synonymous Single Nucleotide Polymorphisms of ATG5 Destabilize ATG12 - ATG5 / ATG16L1 Complex: an enzyme with E3 like activity of ubiquitin conjugation system. Meta Gene, 13 (2017), 38-47
  9. Raghu M. Yennamalli , Siddhant Kalra, Pulkit Anupam Srivastava, Vijay Kumar Garlapati (2017). Computational Tools and Resources for CRISPR/Cas 9 Genome Editing Method. MOJ Proteomics & Bioinformatics, 5 (4), 164-170
  10. Ahmed Moussa, Brigitte Vannier, Raghu M. Yennamalli , Tiratha Raj Singh (2016). Recent Trends and Developments in Bioinformatics: Challenges and Opportunities. CSI Communications, 40 (7), 28-31
  11. Chin-Yuan Chang, Jeremy R. Lohman, Hongnan Cao, Kemin Tan, Jeffrey D. Rudolf, Ming Ma, Weijun Xu, Craig A. Bingman, Raghu M. Yennamalli , Lance Bigelow, Gyorgy Babnigg, Xiaohui Yan, Andrzej Joachimiak, George N. Phillips, Ben Shen (2016). Crystal Structures of SgcE6 and SgcC, the Two-Component Monooxygenase that Catalyzes Hydroxylation of a Carrier Protein-Tethered Substrate during the Biosynthesis of the Enediyne Antitumor Antibiotic C-1027 in Streptomyces globisporus. Biochemistry, 55 (36), 5142-5154. Google Citation
  12. Jones DC, Zheng W, Huang S, Du C, Zhao X, Raghu M. Yennamalli , Sen TZ, Nettleton D, Wurtele ES, Li L (2016). A Clade-Specific Arabidopsis Gene Connects Primary Metabolism and Senescence. . Frontiers in Plant Science , 7 (983), 1-18. Google Citation
  13. Huang T, Chang CY, Lohman J, Rudolf J, Kim Y, Chang C, Yang D, Ma M, Yan X, Crnovcic I, Bigelow L, Clancy S, Bingman CA, Raghu M. Yennamalli , Babnigg G, Joachimiak A, Phillips GN Jr. (2016). Crystal Structure of SgcJ, an NTF2-Like Superfamily Protein Involved in Biosynthesis of the Nine-Membered Enediyne Antitumor Antibiotic C-1027.. The Journal of Antibiotics, 69 (10), 731-740. Google Citation
  14. Lalit Kumar Gautam, Raghu M. Yennamalli , Jitendra Singh Rathore. (2016). Implication on the function of novel Xn-relE toxin structure of Xenorhabdus nematophila using Homology modeling. Current Bioinformatics, 11 (2016), -
  15. Mamta Chauhan, Raghu M. Yennamalli , Vijay Kumar Garlapati (2016). Biochemical Characterization and Molecular Modeling of a Unique Lipase from StaphylococcusAarlettae JPBW-1. Engineering in Life Sciences, 16 (8), 762-768. Google Citation
  16. Hongnan Cao, Kemin Tan, Fengbin Wang, Lance Bigelow, Raghu M. Yennamalli 1, Robert Jedrzejczak, Gyorgy Babnigg, Craig A. Bingman, Andrzej Joachimiak, Madan K. Kharel, Shanteri Singh, Jon S. Thorson, George N. Phillips (2016). Structural Dynamics of a Methionine γ-lyase for Calicheamicin Biosynthesis: Rotation of the conserved tyrosine stacking with pyridoxal phosphate. Structural Dynamics, 3 (3), 34702-12. Google Citation

Conference(s) :
  1. Singh S, Seam RK, Gupta MK, Raghu M. Yennamalli , Harish Changotra (2017). Prediction of Genetic marker in E2F1 Gene by a Computational Approach. Proceedings of the Annual Meeting of the Indian Society of Human Genetics & International Symposium on Trends in Human Genetic Research & Management [42nd : Indian Institute of Sciences, Bangalore : March, 2017], pp.-.. Google Citation

Abstract/ Poster Presentations/ Invited Lectures in Conferences :
  1. Arvind Kumar Yadav, Raghu M. Yennamalli (2018). Identification of Factors Imparting Thermophilicity in Fungi. Proceedings of the International Conference on Bioinformatics (INCOB 2018) [JNU, New Delhi, India : 26-28 September, 2018], pp.6-.. Google Citation
  2. Vidushi Agnihotri, Deepika Chauhan, Pulkit A. Srivastava, Raghu M. Yennamalli , Richa Priyadarshini (2018). Structure and Function Prediction of Arsenate Reductase from Deinococcus indicus DR1. Proceedings of the International Conference on Bioinformatics (INCOB 2018) [New Delhi, India : JNU, 26-28 September, 2018], pp.150-.. Google Citation
  3. Hitesh Thakur, Raghu M. Yennamalli , Richa Priyadarshini (2018). Computational Functional Annotation of a 55aa Protein from Staphylococcus Aureus. Proceedings of the International Conference on Bioinformatics [JNU, New Delhi, India : 26-28 September, 2018], pp.119-.. Google Citation
  4. Pulkit Srivastava, Alok Srivastava, Eric Hegg, Brian Fox, Raghu M. Yennamalli (2018). Systems Biology approach to identify genes involved in ligno-cellulosic deconstruction. Proceedings of the Intelligent Systems for Molecular Biology [Chicago, USA : 6th-10th July 2018], pp.-.. Google Citation
  5. Ankita Shukla, Raghu M. Yennamalli , Tiratha Raj Singh (2017). Structure Based Inference of Functional Single Nucleotide Polymorphism L28F and to Determine its Role in TGFβ1 Allied Colorectal Cancer (CRC). Proceedings of the Indian Conference on Bioinformatics 2017 [Jaipur : 7-9 November], pp.35-37.. Google Citation
  6. Sheena Sarswati, Priya Bharval, Raghu M. Yennamalli (2017). Structural Dynamics of Lytic Polysaccharide Monooxygenases using Elastic Network Models. Proceedings of the Annual Symposium of the Indian Biophysical Society (IBS 2017) [IISER, Mohali : 23-25 March, 2017], pp.-.. Google Citation
  7. Nancy Singh, Sunil Datt Sharma , Raghu M. Yennamalli (2017). Identification of Structural Elements in miRNA using Signal Processing Method. Proceedings of the Annual Symposium of the Indian Biophysical Society (IBS 2017) [IISER, Mohali : 23-25 March, 2017], pp.-.. Google Citation
  8. Raghu M. Yennamalli , Bremen L Braun, Yaping Feng, Ling Li, Taner Z Sen, Eve S. Wurtele (2016). Network Properties of Human Coexpression Network. Proceedings of the National Symposium on Computational Systems Biology [JUIT, Waknaghat : March 18-20, 2016], pp.39-39.. Google Citation

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